Background
Objective
Study Design
Results
Conclusion
Key words
Explore New Ways to Measure Fetal and Infant Brain Development (Round 13). Grand Challenges Exploration. Bill & Melinda Gates Foundation. (http://gcgh.grandchallenges.org/challenge/explore-new-ways-measure-fetal-and-infant-brain-development-round-13) Accessed December 2, 2015.
Methods
Design
Data
Acyl-carnitines | C0, C2, C3, C4, C5, C6, C8, C8:1, C10, C10:1, C12, C12:1, C14, C14:1, C14:2, C16, C18, C18:1, C18:2 |
Amino acids | arginine, phenylalanine, alanine, leucine, ornithine, citruline, tyrosine, glycine, argininosuccinate, methionine, valine, biotinidine |
Fatty acid oxidation | C3DC, C4DC, C5OH, C5DC, C6DC |
Endocrine disorders | 17OHP, TSH |
Galactosemia and biotinidase deficiency | GALT (Galactose-1-Phosphate Uridyltransferase), biotinidase |
Analysis
Data preparation for regression modeling
Predictive modeling
Evaluation of model performance
Model performance for classification as ≤34 or >34 weeks GA
Results
Characteristics of sample
Variable | N (%) |
---|---|
Sex | |
Male | 128,079 (51.29) |
Female | 121,621 (48.71) |
Prematurity categories | |
Extremely preterm (≤27 wk) | 555 (0.22) |
Very preterm (28-32 wk) | 2,616 (1.05) |
Near term (33-36 wk) | 16,462 (6.59) |
Term (≥37 wk) | 230,067 (92.14) |
Small for gestational age (below 10th percentile) | |
Not small for gestational age | 220,167 (91.28) |
Small for gestational age | 21,039 (8.72) |
Large for gestational age (above 90th percentile) | |
Not large for gestational age | 214,800 (89.05) |
Large for gestational age | 26,406 (10.95) |
Multiple births | |
No | 241,206 (96.60) |
Yes | 8,494 (3.40) |
Overall model performance
Model | Adjusted R2 | Overall (n = 51,161) | Term (≥37 wk; n = 47,317) | Near term (33-36 wk; n = 3295) | Very preterm (28-32 wk; n = 456) | Extremely preterm (≤27 wk; n = 93) | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
Root-mean-square error, wk | Correctly classified ±1/2/3/4 wk, % | Root-mean-square error, wk | Correctly classified ±1/2/3/4 wk, % | Root-mean-square error, wk | Correctly classified ±1/2/3/4 wk, % | Root-mean-square error, wk | Correctly classified ±1/2/3/4 wk, % | Root-mean-square error, wk | Correctly classified ±1/2/3/4 wk, % | ||
Full model | 0.65 | 1.06 | 66.8/94.9/99.3/99.8 | 0.97 | 69.1/96.4/99.8/99.97 | 1.70 | 39.0/75.6/94.8/98.9 | 2.30 | 46.5/76.9/90.4/95.0 | 2.10 | 50.7/77.5/89.4/95.1 |
Without birthweight | 0.56 | 1.24 | 61.2/91.4/98.2/99.5 | 1.02 | 64.4/94.5/99.5/99.9/ | 1.80 | 24.4/56.6/85.7/97.1/ | 2.60 | 25.3/49.2/69.7/83.7/ | 3.60 | 23.2/46.1/61.5/73.6/ |
Sex and birthweight only | 0.54 | 1.26 | 58.2/90.73/98.1/99.5/ | 1.11 | 61.3/94.1/99.6/99.9/ | 2.30 | 21.0/50.1/81.1/99.6/ | 3.00 | 24.0/50.3/50.1/73.3/ | 1.90 | 44.4/78.2/92.3/97.9/ |
Model performance in subgroups
Actual gestational age, wk | Predicted, % | Total | |||
---|---|---|---|---|---|
≤27 | 28-32 | 33-36 | ≥37 | ||
≤27 | 79.3 | 20.0 | 0.0 | 0.7 | 100 |
28-32 | 8.1 | 66.7 | 21.9 | 3.3 | 100 |
33-36 | 0.0 | 3.6 | 59.7 | 36.7 | 100 |
≥37 | 0.0 | 0.0 | 2.0 | 98.0 | 100 |
Actual gestational age, wk | Predicted, % | Total | |||
---|---|---|---|---|---|
≤27 | 28-32 | 33-36 | ≥37 | ||
≤27 | 100.0 | 0.0 | 0.0 | 0.0 | 100 |
28-32 | 22.7 | 75.0 | 2.3 | 0.0 | 100 |
33-36 | 0.0 | 14.6 | 79.9 | 5.5 | 100 |
≥37 | 0.0 | 0.1 | 10.4 | 89.5 | 100 |
Model performance for classification as ≤34 or >34 weeks GA

Sensitivity, % | Specificity, % | Positive-predictive value, % | Correctly classified, % |
---|---|---|---|
50 | 99.9 | 96.9 | 98.5 |
60 | 99.9 | 94.3 | 98.8 |
70 | 99.8 | 89.5 | 98.9 |
80 | 99.5 | 80.9 | 98.9 |
90 | 98.6 | 65.8 | 98.4 |
95 | 97.1 | 48.8 | 97.0 |
Model performance based on timing of dating ultrasound scan
Comment
- Saltvedt S.
- Almström H.
- Kublickas M.
- Reilly M.
- Valentin L.
- Grunewald C.
Guttmann A, Vermeulen M, Simeonov D, Walker M, Ray J. Are rates of prenatal ultrasound a valid measure of health system overuse? Institute for Clinical Evaluative Science Policy Brief. Available at: http://www.ices.on.ca/∼/media/Files/Briefing-Notes/ICES ECFA Policy Brief Prenatal Ultrasound 2012-04-04.ashx. Accessed: July 2, 2015.
Appendix
Categorical: SEX Linear, quadratic and cubic(x, x2 and x3 included for each covariate): BIRTHWEIGHT ALA ARG BIO C0 C2 C3 C4 C4OH C5 C6 C8 C8:1 C10 C10:1 C12 C12:1 C14 C14:1 C14:2 C16 C18 C18:1 C18:2 C3DC C4DC C5OH C5DC C6DC CIT GLY LEU MET ORN PHE GALT TSH TYR VAL 17OHP C16OH C16:1OH C18OH C18:1OH C5:1 | |||
Interactions: | |||
BIRTHWEIGHT*SEX BIRTHWEIGHT*ALA BIRTHWEIGHT*ARG ARG*BIO BIO*C0 BIRTHWEIGHT*C2 C2*SEX ALA*C2 ARG*C2 BIRTHWEIGHT*C3 C3*SEX BIO*C3 C0*C3 C2*C3 C2*C4OH C3*C4OH BIRTHWEIGHT*C5 BIRTHWEIGHT*C6 C0*C6 C2*C6 C2*C8 ALA*C8:1 C0*C8:1 BIRTHWEIGHT*C10 ALA*C10 C8*C12 C12:1*SEX C4OH*C12:1 BIRTHWEIGHT*C14 BIRTHWEIGHT*C14:1 C3*C14:1 C8:1*C14:1 BIRTHWEIGHT*C14:2 C2*C14:2 C16*SEX ALA*C16 BIO*C16 C2*C16 C6*C16 C14:2*C16 C2*C18 C12*C18:1 C18:2*SEX ARG*C18:2 C3*C18:2 LEU*PHE MET*PHE | C8:1*C18:2 C12:1*C18:2 C16*C18:2 C18*C18:2 BIRTHWEIGHT*C3DC C8*C3DC C8:1*C3DC C12*C3DC C18:2*C3DC C2*C4DC C5*C4DC C12:1*C4DC C14*C4DC C16*C4DC C18:1*C4DC C4OH*C5OH C14:1*C5OH C18:2*C5OH BIRTHWEIGHT*C5DC ARG*C5DC BIO*C5DC C12*C5DC C18:1*C5DC ALA*C6DC C0*C6DC C2*C6DC C4OH*C6DC C8:1*C6DC C14:1*C6DC C16*C6DC C18:1*C6DC C3DC*C6DC C2*CIT C5*CIT C3DC*CIT C4DC*CIT BIRTHWEIGHT*GLY C0*GLY C2*GLY C3*GLY C16*GLY C18:2*GLY C6DC*GLY CIT*GLY BIRTHWEIGHT*LEU C2*LEU C3*LEU C4DC*LEU | C6DC*LEU C3*MET C10*MET C12*MET C18:1*MET BIRTHWEIGHT*ORN BIO*ORN C0*ORN C2*ORN C3*ORN C5*ORN C8*ORN C12*ORN C14:1*ORN C18*ORN C18:1*ORN C4DC*ORN C5DC*ORN CIT*ORN GLY*ORN PHE*SEX ALA*PHE BIO*PHE C18*PHE C4DC*PHE C6DC*PHE GLY*PHE BIRTHWEIGHT*GALT C14:2*GALT C16*GALT BIRTHWEIGHT*TSH C6*TSH C18:2*TSH C4DC*TSH C5DC*TSH CIT*TSH GLY*TSH ORN*TSH GALT*TSH BIRTHWEIGHT*TYR ALA*TYR C2*TYR C6*TYR C12:1*TYR C4DC*TYR C6DC*TYR CIT*TYR MET*TYR ORN*TYR | GALT*TYR TSH*TYR BIRTHWEIGHT*VAL BIO*VAL C2*VAL C5*VAL C8:1*VAL C14:1*VAL C18:2*VAL C5DC*VAL LEU*VAL MET*VAL TYR*VAL BIRTHWEIGHT*17OHP C2*17OHP C4OH*17OHP C8:1*17OHP C12:1*17OHP C4DC*17OHP C6DC*17OHP CIT*17OHP LEU*17OHP MET*17OHP TYR*17OHP VAL*17OHP C2*C16:1OH GLY*C16:1OH BIRTHWEIGHT*C5:1 C2*C5:1 C5DC*C5:1 |
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Article info
Publication history
Footnotes
Supported by This study was funded by a Grand Challenges Exploration grant from the Bill & Melinda Gates Foundation (OPP1119206) and by the Institute for Clinical Evaluative Sciences (ICES), which is funded by an annual grant from the Ontario Ministry of Health and Long-Term Care (MOHLTC).
The opinions, results, and conclusions reported in this article are those of the authors and are independent from the funding sources. No endorsement by ICES or the Ontario MOHLTC is intended or should be inferred. Parts of this material are based on data and information compiled and provided by the Canadian Institute for Health Information (CIHI). However, the analyses, conclusions, opinions and statements expressed herein are those of the author and not necessarily those of CIHI.
The authors report no conflict of interest.
Cite this article as: Wilson K, Hawken S, Potter B, et al. Accurate prediction of gestational age using newborn screening analyte data. Am J Obstet Gynecol 2016;214:513.e1-9.
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